Season chicken with salt and pepper, to taste. Place chicken into 6-quart slow cooker.
In a large bowl, combine crushed tomatoes, onion, basil, oregano, parsley, and red pepper flakes. Stir into the slow cooker and gently toss to combine. Cover and cook in low heat for 4 hours.
Remove chicken from slow cooker and shred, using two forks.
In a large pot of boiling, salted water, cook pasta according to package directions; drain.
Stir pasta and chicken into the slow cooker; top with cheeses. Cover and cook on low heat for 10-20 minutes or until cheeses have melted.
Serve immediately, garnished with parsley if desired.